Mathematics at UBD
Mathematics at UBD
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A.R. Kinjo
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BioHackathon 2015: Semantics of data for life sciences and reproducible research
BioHackathon series in 2013 and 2014: Improvements of semantic interoperability in life science data and services
Cooperative “folding transition” in the sequence space facilitates function-driven evolution of protein families
New tools and functions in data-out activities at Protein Data Bank Japan (PDBj)
Neuro-symbolic representation learning on biological knowledge graphs
Protein Data Bank Japan (PDBj): Updated user interfaces, resource description framework, analysis tools for large structures
VaProS: a database-integration approach for protein/genome information retrieval
Molmil: A molecular viewer for the PDB and beyond
Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins
Specific non-local interactions are not necessary for recovering native protein dynamics
Rigid-body motions of interacting proteins dominate multispecific binding of ubiquitin in a shape-dependent manner
Exhaustive comparison and classification of ligand-binding surfaces in proteins
Counterbalance of ligand-and self-coupled motions characterizes multispecificity of Ubiquitin
Functional structural motifs for protein-ligand, protein-protein, and protein-nucleic acid interactions and their connection to supersecondary structures
Composite structural motifs of binding sites for delineating biological functions of proteins
GIRAF: A method for fast search and flexible alignment of ligand binding interfaces in proteins at atomic resolution
Protein Data Bank Japan (PDBj): Maintaining a structural data archive and resource description framework format
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