Mathematics at UBD
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Allosterism
Specific non-local interactions are not necessary for recovering native protein dynamics
The elastic network model (ENM) is a widely used method to study native protein dynamics by normal mode analysis (NMA). In ENM we need …
B. Dasgupta
,
K. Kasahara
,
N. Kamiya
,
H. Nakamura
,
A.R. Kinjo
Cite
DOI
Rigid-body motions of interacting proteins dominate multispecific binding of ubiquitin in a shape-dependent manner
To understand the dynamic aspects of multispecificity of ubiquitin, we studied nine ubiquitin-ligand (partner protein) complexes by …
B. Dasgupta
,
H. Nakamura
,
A.R. Kinjo
Cite
DOI
Counterbalance of ligand-and self-coupled motions characterizes multispecificity of Ubiquitin
Date hub proteins are a type of proteins that show multispecificity in a time-dependent manner. To understand dynamic aspects of such …
B. Dasgupta
,
H. Nakamura
,
A.R. Kinjo
Cite
DOI
Cite
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