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Structural Biology
New tools and functions in data-out activities at Protein Data Bank Japan (PDBj)
The Protein Data Bank Japan (PDBj), a member of the worldwide Protein Data Bank (wwPDB), accepts and processes the deposited data of …
A.R. Kinjo
,
G.-J. Bekker
,
H. Wako
,
S. Endo
,
Y. Tsuchiya
,
H. Sato
,
H. Nishi
,
K. Kinoshita
,
H. Suzuki
,
T. Kawabata
,
M. Yokochi
,
T. Iwata
,
N. Kobayashi
,
T. Fujiwara
,
G. Kurisu
,
H. Nakamura
Cite
DOI
Protein Data Bank Japan (PDBj): Updated user interfaces, resource description framework, analysis tools for large structures
The Protein Data Bank Japan (PDBj,
http://pdbj.org
), a member of the worldwide Protein Data Bank (ww- PDB), accepts and processes the …
A.R. Kinjo
,
G.-J. Bekker
,
H. Suzuki
,
Y. Tsuchiya
,
T. Kawabata
,
Y. Ikegawa
,
H. Nakamura
Cite
DOI
Molmil: A molecular viewer for the PDB and beyond
We have developed a new platform-independent web-based molecular viewer using JavaScript and WebGL. The molecular viewer, Molmil, has …
G.-J. Bekker
,
H. Nakamura
,
A.R. Kinjo
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DOI
Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins
Background: The nuclear magnetic resonance (NMR) spectroscopic data for biological macromolecules archived at the BioMagResBank (BMRB) …
M. Yokochi
,
N. Kobayashi
,
E.L. Ulrich
,
A.R. Kinjo
,
T. Iwata
,
Y.E. Ioannidis
,
M. Livny
,
J.L. Markley
,
H. Nakamura
,
C. Kojima
,
T. Fujiwara
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DOI
Functional structural motifs for protein-ligand, protein-protein, and protein-nucleic acid interactions and their connection to supersecondary structures
Protein functions are mediated by interactions between proteins and other molecules. One useful approach to analyze protein functions …
A.R. Kinjo
,
H. Nakamura
Cite
DOI
Protein Data Bank Japan (PDBj): Maintaining a structural data archive and resource description framework format
The Protein Data Bank Japan (PDBj,
http://pdbj.org
) is a member of the worldwide Protein Data Bank (wwPDB) and accepts and processes …
A.R. Kinjo
,
H. Suzuki
,
R. Yamashita
,
Y. Ikegawa
,
T. Kudou
,
R. Igarashi
,
Y. Kengaku
,
H. Cho
,
D.M. Standley
,
A. Nakagawa
,
H. Nakamura
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DOI
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